Program

April 7

Chair: Atsushi Mochizuki
09:45 - 10:00 Tetsuo Hatsuda Introduction of iTHES program, RIKEN
10:00 - 10:30 Toshihide Kobayashi Imaging lipids and lipid domains
10:30 - 11:00 Coffee break  
11:00 - 11:30 Kabir Husain (Rao lab.) Dynamics of emergent structures in an active polar fluid
11:30 - 12:00 Peter Greimel (Kobayashi lab.) Physical Explanation of the cardiolipin: 10-N-nonyl acridine orange interaction
12:00 - 13:30 Lunch break  
13:30 - 14:30 Poster session  
Chair: Mukund Thattai
14:30 - 15:00 Amit Das (Rao lab.) Phase segregation of passive molecules in an active fluid
15:00 - 15:30 Masashi Tachikawa Deformation of cell membrane invagination under mechanical stress
15:30 - 16:00 Amit Singh (Rao lab.) Coexistence of active fluids and its cellular implications
16:00 - 16:30 Coffee break  
Chair: Isseki Yu
16:30 - 17:00 Yuji Sakai (Tachikawa group) A polymer model for eukaryotic chromosome segregation: entropic segregation and topology induced by loop formation
17:00 - 17:30 Noriaki Ogawa (Hatsuda lab.) Physical Approach to Fish Retinal Cone Mosaic
18:00 - Dinner  

April 8

09:00 - 10:00 Visit to RIKEN Laboratories  
Chair: Masashi Tachikawa
10:00 - 10:30 Yasushi Sako Single-molecule measurements of biological systems
10:30 - 11:00 Isseki Yu (Sugita lab.) All-atom Molecular Dynamics Study of the Cellular Environment in Bacterial Cytoplasm
11:00 - 11:30 Coffee break  
11:30 - 12:00 Venkatakrishnan Ramaswamy
(Simons Postdoctoral Fellows)
Theoretical connectomics of neurons
12:00 - 13:30 Lunch break  
13:30 - 14:30 Poster session  
Chair: Gen Kurosawa
14:30 - 15:00 Wataru Nishima (Sugita lab.) Molecular mechanism of proton transfer in H+-coupled multi-drug transporter MATE
15:00 - 15:30 Koichi Takahashi Simulating intracellular biochemical reaction networks at the molecular resolution
15:30 - 16:00 Coffee break  
Colloquium
16:00 - 17:30 Madan Rao Active Composite Cell Surface: Implications to molecular organization, shape and information processing
18:00 - Dinner  

April 9

Chair: Yuji Sugita
09:30 - 10:00 Vaibhhav Sinha (Krishna lab.) Optimal strategies in competing bacterial viruses
10:00 - 10:30 Gen Kurosawa Toward the Simplest Theoretical Model for the Circadian Clock
10:30 - 11:00 Coffee break  
11:00 - 11:30 Rohit Suratekar (Krishna lab.) Speeding up PI(4,5)P2 recovery with top gear
11:30 - 12:00 Prabhat Shankar (QBiC) Relation between Response and Noise in Adaptation Networks
12:00 - 13:30 Lunch break  
13:30 - 18:00 Excursion

-> Hamarikyu Gardens

-> Sumidagawa Water Bus (15:55)

-> Asakusa

-> Dinner at a restaurant (Sekai Cafe) (17:30)

-> Wako

April 10

09:00 - 10:00 Visit to RIKEN Laboratories  
Chair: Tetsuo Hatsuda
10:00 - 10:30 Mukund Thattai Hybridization as a source of new organelles in eukaryote evolution
10:30 - 11:00 Coffee break  
11:00 - 11:30 Somya Mani (Thattai lab.) Resilience and reprogramming of vesicle traffic
11:30 - 12:00 Yoshinori Hayakawa (Mochizuki lab.) Mathematical study for the diversity of plant morphogenesis
12:00 - 13:30 Lunch break  
13:30 - 14:30 Poster session  
Chair: Madan Rao
14:30 - 15:00 Ramya Purkanti (Thattai lab.) Insights on eukaryote evolution from a phylogenetic study of dynamins
15:00 - 15:30 Takashi Okada (Mochizuki lab.) Sensitivity and network topology in biochemical reaction system
15:30 - 16:00 Anjali Jaiman (Thattai lab.) Design principles of glycan biosynthesis
16:00 - 16:30 Coffee break  
16:30 - 17:00 Free discussion  
18:00 - Dinner  

Poster Session

1 Motohide Murate (Kobayashi lab.) Transbilayer distribution of lipids at nano scale
2 Takehiko Inaba (Kobayashi lab.) Phopholipase Cbeta1 induces phosphatidylethanolamine-dependent membrane tubulation.
3 Akiko Yamaji-Hasegawa (Kobayashi lab.) A novel lipid binding protein which recognizes specific organization of cholesterol
4 Koichiro Shirota (Kobayashi lab.) Raman analysis of sphingomyelin clusters in model membranes
5 Toshihide Kobayashi Imaging lipids and lipid domains
6 Amit Das (Rao lab.) Phase segregation of passive molecules in an active fluid
7 Peter Greimel (Kobayashi lab.) Physical Explanation of the cardiolipin: 10-N-nonyl acridine orange interaction
8 Kabir Husain (Rao lab.) Dynamics of emergent structures in an active polar fluid
9 Masashi Tachikawa Deformation of cell membrane invagination under mechanical stress
10 Amit Singh (Rao lab.) Coexistence of active fluids and its cellular implications
11 Yuji Sakai (Tachikawa group) A polymer model for eukaryotic chromosome segregation: entropic segregation and topology induced by loop formation
12 Noriaki Ogawa (Hatsuda lab.) Physical Approach to Fish Retinal Cone Mosaic
13 Yasushi Sako Single-molecule measurements of biological systems
14 Isseki Yu (Sugita lab.) All-atom Molecular Dynamics Study of the Cellular Environment in Bacterial Cytoplasm
15 Venkatakrishnan Ramaswamy
(Simons Postdoctoral Fellows)
Theoretical connectomics of neurons
16 Wataru Nishima (Sugita lab.) Molecular mechanism of proton transfer in H+-coupled multi-drug transporter MATE
17 Koichi Takahashi Simulating intracellular biochemical reaction networks at the molecular resolution
18 Madan Rao Active Composite Cell Surface: Implications to molecular organization, shape and information processing
19 Vaibhhav Sinha (Krishna lab.) Optimal strategies in competing bacterial viruses
20 Gen Kurosawa Toward the Simplest Theoretical Model for the Circadian Clock
21 Rohit Suratekar (Krishna lab.) Speeding up PI(4,5)P2 recovery with top gear
22 Prabhat Shankar (QBiC) Relation between Response and Noise in Adaptation Networks
23 Mukund Thattai Hybridization as a source of new organelles in eukaryote evolution
24 Somya Mani (Thattai lab.) Resilience and reprogramming of vesicle traffic
25 Yoshinori Hayakawa (Mochizuki lab.) Mathematical study for the diversity of plant morphogenesis
26 Ramya Purkanti (Thattai lab.) Insights on eukaryote evolution from a phylogenetic study of dynamins
27 Takashi Okada (Mochizuki lab.) Sensitivity and network topology in biochemical reaction system
28 Anjali Jaiman (Thattai lab.) Design principles of glycan biosynthesis
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